Last Updated: February 25, 2008
Jin G, Wu CC, Tawatao RI, Chan M, Carson DA, Cottam HB. "Synthesis and immunostimulatory activity of 8-substituted amino 9-benzyladenines as potent Toll-like receptor 7 agonists." Bioorg Med Chem Lett. 2006 Sep 1;16(17):4559-63. PMID: 16784848 Castro JE, Prada CE, Aguillon RA, Kitada S, Fukuda T, Motta M, Wu C, Dicker F, Sun G, Wang JY, Carson DA, Reed JC, Kipps TJ. "Thymidine-phosphorothioate oligonucleotides induce activation and apoptosis of CLL cells independently of CpG motifs or BCL-2 gene interference." Leukemia. 2006 Apr;20(4):680-8. PMID: 16498393 Lee J, Wu CC, Lee KJ, Chuang TH, Katakura K, Liu YT, Chan M, Tawatao R, Chung M, Shen C, Cottam HB, Lai MM, Raz E, Carson DA. "Activation of anti-hepatitis C virus responses via Toll-like receptor 7." Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1828-33. PMID: 16446426 Lu D, Cottam HB, Corr M, Carson DA. "Repression of beta-catenin function in malignant cells by nonsteroidal antiinflammatory drugs." Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18567-71. PMID: 16352713 Barchechath SD, Tawatao RI, Corr M, Carson DA, Cottam HB. "Inhibitors of apoptosis in lymphocytes: synthesis and biological evaluation of compounds related to pifithrin-alpha." J Med Chem. 2005 Oct 6;48(20):6409-22. PMID: 16190767 Barchechath SD, Tawatao RI, Corr M, Carson DA, Cottam HB. "Quinolinium salt as a potent inhibitor of lymphocyte apoptosis." Bioorg Med Chem Lett. 2005 Apr 1;15(7):1785-8. PMID: 15780606 Kolluri SK, Corr M, James SY, Bernasconi M, Lu D, Liu W, Cottam HB, Leoni LM, Carson DA, Zhang XK. "The R-enantiomer of the nonsteroidal antiinflammatory drug etodolac binds retinoid X receptor and induces tumor-selective apoptosis." Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2525-30. PMID: 15699354 Ohata J, Zvaifler NJ, Nishio M, Boyle DL, Kalled SL, Carson DA, Kipps TJ. "Fibroblast-like synoviocytes of mesenchymal origin express functional B cell-activating factor of the TNF family in response to proinflammatory cytokines." J Immunol. 2005 Jan 15;174(2):864-70. PMID: 15634908 Diccianni MB, Yu J, Meppelink G, de Vries M, Shao L, Gebauer S, Shih H, Roberts W, Kilcoin NP, Pullen J, Carson DA, Yu AL. "3-amino thioacridone inhibits DNA synthesis and induce DNA damage in T-cell acute lymphoblastic leukemia (T-ALL) in a p16-dependent manner." J Exp Ther Oncol. 2004 Oct;4(3):223-37. PMID: 15724842 Wu CC, Lee J, Raz E, Corr M, Carson DA. "Necessity of oligonucleotide aggregation for toll-like receptor 9 activation." J Biol Chem. 2004 Aug 6;279(32):33071-8. PMID: 15184382 Lu D, Zhao Y, Tawatao R, Cottam HB, Sen M, Leoni LM, Kipps TJ, Corr M, Carson DA. "Activation of the Wnt signaling pathway in chronic lymphocytic leukemia." Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):3118-23. PMID: 14973184 Sen M, Cheng YH, Goldring MB, Lotz MK, Carson DA. "WISP3-dependent regulation of type II collagen and aggrecan production in chondrocytes." Arthritis Rheum. 2004 Feb;50(2):488-97. PMID: 14872491 Wu CC, Castro JE, Motta M, Cottam HB, Kyburz D, Kipps TJ, Corr M, Carson DA. "Selection of oligonucleotide aptamers with enhanced uptake and activation of human leukemia B cells." Hum Gene Ther. 2003 Jun 10;14(9):849-60. PMID: 12828856 Lee J, Chuang TH, Redecke V, She L, Pitha PM, Carson DA, Raz E, Cottam HB. "Molecular basis for the immunostimulatory activity of guanine nucleoside analogs: activation of Toll-like receptor 7." Proc Natl Acad Sci U S A. 2003 May 27;100(11):6646-51. PMID: 12738885 Carson DA, Leoni LM. "Hairy-cell leukaemia as a model for drug development." Best Pract Res Clin Haematol. 2003 Mar;16(1):83-9. PMID: 12670467 Silverman GJ, Carson DA. "Roles of B cells in rheumatoid arthritis." Arthritis Res Ther. 2003;5 Suppl 4:S1-6. PMID: 15180890 Sen M, Reifert J, Lauterbach K, Wolf V, Rubin JS, Corr M, Carson DA. "Regulation of fibronectin and metalloproteinase expression by Wnt signaling in rheumatoid arthritis synoviocytes." Arthritis Rheum. 2002 Nov;46(11):2867-77. PMID: 12428226 Rhee CS, Sen M, Lu D, Wu C, Leoni L, Rubin J, Corr M, Carson DA. "Wnt and frizzled receptors as potential targets for immunotherapy in head and neck squamous cell carcinomas." Oncogene. 2002 Sep 26;21(43):6598-605. PMID: 12242657
Mitra SK, Mikolon D, Molina JE, Hsia DA, Hanson DA, Chi A, Lim ST, Bernard-Trifilo JA, Ilic D, Stupack DG, Cheresh DA, Schlaepfer DD. "Intrinsic FAK activity and Y925 phosphorylation facilitate an angiogenic switch in tumors." Oncogene. 2006 May 8; PMID: 16682956 abstract Stupack DG, Teitz T, Potter MD, Mikolon D, Houghton PJ, Kidd VJ, Lahti JM, Cheresh DA. "Potentiation of neuroblastoma metastasis by loss of caspase-8." Nature. 2006 Jan 5;439(7072):95-9. PMID: 16397500 abstract Weis SM, Cheresh DA. "Pathophysiological consequences of VEGF-induced vascular permeability." Nature. 2005 Sep 22;437(7058):497-504. PMID: 16177780 abstract Potter MD, Barbero S, Cheresh DA. "Tyrosine phosphorylation of VE-cadherin prevents binding of p120- and beta-catenin and maintains the cellular mesenchymal state." J Biol Chem. 2005 Sep 9;280(36):31906-12. Epub 2005 Jul 18. PMID: 16027153 abstract Stupack DG, Cheresh DA. "Integrins and angiogenesis." Curr Top Dev Biol. 2004;64:207-38. Review. PMID: 15563949 abstract Stupack DG, Cheresh DA. "A Bit-role for integrins in apoptosis." Nat Cell Biol. 2004 May;6(5):388-9. PMID: 15122265 Stupack DG, Cheresh DA. "Apoptotic cues from the extracellular matrix: regulators of angiogenesis." Oncogene. 2003 Dec 8;22(56):9022-9. Review. PMID: 14663480 abstract Hood JD, Frausto R, Kiosses WB, Schwartz MA, Cheresh DA. "Differential alphav integrin-mediated Ras-ERK signaling during two pathways of angiogenesis." J Cell Biol. 2003 Sep 1;162(5):933-43. PMID: 12952943 abstract Hood JD, Cheresh DA. "Building a better Trap." Proc Natl Acad Sci U S A. 2003 Jul 22;100(15):8624-5. Epub 2003 Jul 14. PMID: 12861079 Hood JD, Cheresh DA. "Targeted delivery of mutant Raf kinase to neovessels causes tumor regression." Cold Spring Harb Symp Quant Biol. 2002;67:285-91. Review. PMID: 12858551 Alavi A, Hood JD, Frausto R, Stupack DG, Cheresh DA. "Role of Raf in vascular protection from distinct apoptotic stimuli." Science. 2003 Jul 4;301(5629):94-6. PMID: 12843393 abstract Hood JD, Cheresh DA. "Role of integrins in cell invasion and migration." Nat Rev Cancer. 2002 Feb;2(2):91-100. Review. PMID: 12635172 abstract Hsia DA, Mitra SK, Hauck CR, Streblow DN, Nelson JA, Ilic D, Huang S, Li E, Nemerow GR, Leng J, Spencer KS, Cheresh DA, Schlaepfer DD. "Differential regulation of cell motility and invasion by FAK." J Cell Biol. 2003 Mar 3;160(5):753-67. PMID: 12615911 abstract Hauck CR, Hsia DA, Puente XS, Cheresh DA, Schlaepfer DD. "FRNK blocks v-Src-stimulated invasion and experimental metastases without effects on cell motility or growth." EMBO J. 2002 Dec 2;21(23):6289-302. PMID: 12456636 abstract Stupack DG, Cheresh DA. "Get a ligand, get a life: integrins, signaling and cell survival." J Cell Sci. 2002 Oct 1;115(Pt 19):3729-38. Review. PMID: 12235283 abstract Hood JD, Bednarski M, Frausto R, Guccione S, Reisfeld RA, Xiang R, Cheresh DA. "Tumor regression by targeted gene delivery to the neovasculature." Science. 2002 Jun 28;296(5577):2404-7. PMID: 12089446 abstract Wakasugi K, Slike BM, Hood J, Ewalt KL, Cheresh DA, Schimmel P. "Induction of angiogenesis by a fragment of human tyrosyl-tRNA synthetase." J Biol Chem. 2002 Jun 7;277(23):20124-6. Epub 2002 Apr 15. PMID: 11956181 abstract Nemerow GR, Cheresh DA. "Herpesvirus hijacks an integrin." Nat Cell Biol. 2002 Apr;4(4):E69-71. PMID: 11944033 Kiosses WB, Hood J, Yang S, Gerritsen ME, Cheresh DA, Alderson N, Schwartz MA. "A dominant-negative p65 PAK peptide inhibits angiogenesis." Circ Res. 2002 Apr 5;90(6):697-702. PMID: 11934838 abstract Eliceiri BP, Puente XS, Hood JD, Stupack DG, Schlaepfer DD, Huang XZ, Sheppard D, Cheresh DA. "Src-mediated coupling of focal adhesion kinase to integrin alpha(v)beta5 in vascular endothelial growth factor signaling." J Cell Biol. 2002 Apr 1;157(1):149-60. Epub 2002 Apr 1. PMID: 11927607 abstract Cheresh DA, Stupack DG. "Integrin-mediated death: an explanation of the integrin-knockout phenotype?" Nat Med. 2002 Mar;8(3):193-4. No PMID: 11875466 Stromblad S, Fotedar A, Brickner H, Theesfeld C, Aguilar de Diaz E, Friedlander M, Cheresh DA. "Loss of p53 compensates for alpha v-integrin function in retinal neovascularization." J Biol Chem. 2002 Apr 19;277(16):13371-4. Epub 2002 Feb 20. PMID: 11856728 abstract Stupack DG, Cheresh DA. "ECM remodeling regulates angiogenesis: endothelial integrins look for new ligands." Sci STKE. 2002 Feb 12;2002(119):PE7. Review. PMID: 11842241 abstract Wakasugi K, Slike BM, Hood J, Otani A, Ewalt KL, Friedlander M, Cheresh DA, Schimmel P. "A human aminoacyl-tRNA synthetase as a regulator of angiogenesis." Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):173-7. Epub 2002 Jan 2. PMID: 11773626 abstract Stupack DG, Puente XS, Boutsaboualoy S, Storgard CM, Cheresh DA. "Apoptosis of adherent cells by recruitment of caspase-8 to unligated integrins." J Cell Biol. 2001 Oct 29;155(3):459-70. Epub 2001 Oct 29. PMID: 11684710 abstract Eliceiri BP, Cheresh DA. "Adhesion events in angiogenesis." Curr Opin Cell Biol. 2001 Oct;13(5):563-8. Review. PMID: 11544024 abstract Boger DL, Goldberg J, Silletti S, Kessler T, Cheresh DA. "Identification of a novel class of small-molecule antiangiogenic agents through the screening of combinatorial libraries which function by inhibiting the binding and localization of proteinase MMP2 to integrin alpha(V)beta(3)." J Am Chem Soc. 2001 Feb 21;123(7):1280-8. PMID: 11456699 abstract Li E, Brown SL, Stupack DG, Puente XS, Cheresh DA, Nemerow GR. "Integrin alpha(v)beta1 is an adenovirus coreceptor." J Virol. 2001 Jun;75(11):5405-9. PMID: 11333925 abstract Paul R, Zhang ZG, Eliceiri BP, Jiang Q, Boccia AD, Zhang RL, Chopp M, Cheresh DA. "Src deficiency or blockade of Src activity in mice provides cerebral protection following stroke." Nat Med. 2001 Feb;7(2):222-7. PMID: 11175854 abstract Silletti S, Kessler T, Goldberg J, Boger DL, Cheresh DA. "Disruption of matrix metalloproteinase 2 binding to integrin alpha vbeta 3 by an organic molecule inhibits angiogenesis and tumor growth in vivo." Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):119-24. PMID: 11134507 abstract Bonfoco E, Chen W, Paul R, Cheresh DA, Cooper NR. "Beta1 integrin antagonism on adherent, differentiated human neuroblastoma cells triggers an apoptotic signaling pathway." Neuroscience. 2000;101(4):1145-52. PMID: 11113363 abstract Pfeifer A, Kessler T, Silletti S, Cheresh DA, Verma IM. "Suppression of angiogenesis by lentiviral delivery of PEX, a noncatalytic fragment of matrix metalloproteinase 2." Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12227-32. PMID: 11035804 abstract Gutheil JC, Campbell TN, Pierce PR, Watkins JD, Huse WD, Bodkin DJ, Cheresh DA. "Targeted antiangiogenic therapy for cancer using Vitaxin: a humanized monoclonal antibody to the integrin alphavbeta3." Clin Cancer Res. 2000 Aug;6(8):3056-61. PMID: 10955784 abstract Eliceiri BP, Cheresh DA. "Role of alpha v integrins during angiogenesis." Cancer J. 2000 May;6 Suppl 3:S245-9. Review. PMID: 10874494 abstract Wang K, Guan T, Cheresh DA, Nemerow GR. "Regulation of adenovirus membrane penetration by the cytoplasmic tail of integrin beta5." J Virol. 2000 Mar;74(6):2731-9. PMID: 10684289 abstract Eliceiri BP, Paul R, Schwartzberg PL, Hood JD, Leng J, Cheresh DA. "Selective requirement for Src kinases during VEGF-induced angiogenesis and vascular permeability." Mol Cell. 1999 Dec;4(6):915-24. PMID: 10635317 abstract Leng J, Klemke RL, Reddy AC, Cheresh DA. "Potentiation of cell migration by adhesion-dependent cooperative signals from the GTPase Rac and Raf kinase." J Biol Chem. 1999 Dec 31;274(53):37855-61. PMID: 10608850 abstract Brooks PC, Montgomery AM, Cheresh DA. "Use of the 10-day-old chick embryo model for studying angiogenesis." Methods Mol Biol. 1999;129:257-69. PMID: 10494570 Cheresh DA, Leng J, Klemke RL. "Regulation of cell contraction and membrane ruffling by distinct signals in migratory cells." J Cell Biol. 1999 Sep 6;146(5):1107-16. PMID: 10477763 abstract Pampori N, Hato T, Stupack DG, Aidoudi S, Cheresh DA, Nemerow GR, Shattil SJ. "Mechanisms and consequences of affinity modulation of integrin alpha(V)beta(3) detected with a novel patch-engineered monovalent ligand." J Biol Chem. 1999 Jul 30;274(31):21609-16. PMID: 10419468 abstract Stupack DG, Storgard CM, Cheresh DA. "A role for angiogenesis in rheumatoid arthritis." Braz J Med Biol Res. 1999 May;32(5):573-81. Review. PMID: 10412569 abstract Eliceiri BP, Cheresh DA. "The role of alphav integrins during angiogenesis: insights into potential mechanisms of action and clinical development." J Clin Invest. 1999 May;103(9):1227-30. Review. PMID: 10225964 van der Zee R, Murohara T, Passeri J, Kearney M, Cheresh DA, Isner JM. "Reduced intimal thickening following alpha(v)beta3 blockade is associated with smooth muscle cell apoptosis." Cell Adhes Commun. 1998;6(5):371-9. PMID: 10223353 abstract Stupack DG, Li E, Silletti SA, Kehler JA, Geahlen RL, Hahn K, Nemerow GR, Cheresh DA. "Matrix valency regulates integrin-mediated lymphoid adhesion via Syk kinase." J Cell Biol. 1999 Feb 22;144(4):777-88. PMID: 10037798 abstract Eliceiri BP, Cheresh DA. "The role of alphav integrins during angiogenesis." Mol Med. 1998 Dec;4(12):741-50. Review. PMID: 9990860
Birkbeck AL, Zlatanovic S, Esener SC. "Self-aligned spatial filtering using laser optical tweezers." Appl Opt. 2006 Sep 1;45(25):6429-34 PMID: 16912779 Shao B, Esener SC, Nascimento JM, Botvinick EL, Berns MW. "Dynamically adjustable annular laser trapping based on axicons." Appl Opt. 2006 Sep 1;45(25):6421-8. PMID: 16912778 Wen P, Sanchez M, Gross M, Esener SC. "Optical bistability in vertical-cavity semiconductor optical amplifiers." Appl Opt. 2006 Sep 1;45(25):6349-57. PMID: 16912770 Barbastathis G, Krishnamoorthy A, Esener SC. "Information Photonics: introduction." Appl Opt. 2006 Sep 1;45(25):6315-7. PMID: 16912765 Flynn RA, Shao B, Chachisvilis M, Ozkan M, Esener SC. "Counter-propagating optical trapping system for size and refractive index measurement of microparticles." Biosens Bioelectron. 2006 Jan 15;21(7):1029-36. PMID: 16368481 Birkbeck AL, Zlatanovic S, Esener SC, Ozkan M. "Laser-tweezer-controlled solid immersion microscopy in microfluidic systems." Opt Lett. 2005 Oct 15;30(20):2712-4. PMID: 16252750 Song D, Sanchez M, Gross M, Esener S. "Micro gradient-index conical lenses: simulation and fabrication methods." Appl Opt. 2005 Jun 20;44(18):3747-51. PMID: 15989049 Flynn RA, Shao B, Chachisvilis M, Ozkan M, Esener SC. "Two-beam optical traps: refractive index and size measurements of microscale objects." Biomed Microdevices. 2005 Jun;7(2):93-7. PMID: 15940421 Sanchez M, Wen P, Gross M, Esener S. "Polarization anisotropy in vertical-cavity semiconductor optical amplifiers." Opt Lett. 2004 Aug 15;29(16):1888-90. PMID: 15357349 Forster AH, Wang MM, Butler WF, Chachisvilis M, Chung TD, Esener SC, Hall JM, Kibar O, Lykstad K, Marchand PJ, Mercer EM, Pestana LM, Sur S, Tu E, Yang R, Zhang H, Kariv I. "Use of moving optical gradient fields for analysis of apoptotic cellular responses in a chronic myeloid leukemia cell model." Anal Biochem. 2004 Apr 1;327(1):14-22. PMID: 15033506 Ozkan NS, Hendrick WL, Marchand PJ, Esener SC. "Misalignment tolerance analysis of free-space optical interconnects via statistical methods." Appl Opt. 2002 May 10;41(14):2686-94. PMID: 12022668 Li G, Huang D, Yuceturk E, Marchand PJ, Esener SC, Ozguz VH, Liu Y. "Three-dimensional optoelectronic stacked processor by use of free-space optical interconnection and three-dimensional VLSI chip stacks." Appl Opt. 2002 Jan 10;41(2):348-60. PMID: 11899274 Ozkan M, Ozkan CS, Kibar O, Wang MM, Bhatia S, Esener SC. "Heterogeneous integration through electrokinetic migration." IEEE Eng Med Biol Mag. 2001 Nov-Dec;20(6):144-51. PMID: 11838246
Cheng TC, Manorek G, Samimi G, Lin X, Berry CC, Howell SB. "Identification of genes whose expression is associated with cisplatin resistance in human ovarian carcinoma cells." Cancer Chemother Pharmacol. 2006 Sep;58(3):384-95. PMID: 16404635 Holzer AK, Varki NM, Le QT, Gibson MA, Naredi P, Howell SB. "Expression of the human copper influx transporter 1 in normal and malignant human tissues." J Histochem Cytochem. 2006 Sep;54(9):1041-9. PMID: 16709730 Holzer AK, Manorek GH, Howell SB. "The contribution of the major copper influx transporter CTR1 to the cellular accumulation of cisplatin, carboplatin and oxaliplatin." Mol Pharmacol. 2006 Jul 17; PMID: 16847145 Samimi G, Kishimoto S, Manorek G, Breaux JK, Howell SB. "Novel mechanisms of platinum drug resistance identified in cells selected for resistance to JM118 the active metabolite of satraplatin." Cancer Chemother Pharmacol. 2006 Jun 13; PMID: 16770583 Samimi G, Howell SB. "Modulation of the cellular pharmacology of JM118, the major metabolite of satraplatin, by copper influx and efflux transporters." Cancer Chemother Pharmacol. 2006 Jun;57(6):781-8. PMID: 16170571 Lin X, Howell SB. "DNA mismatch repair and p53 function are major determinants of the rate of development of cisplatin resistance." Mol Cancer Ther. 2006 May;5(5):1239-47. PMID: 16731756 Lin X, Okuda T, Trang J, Howell SB. "Human REV1 modulates the cytotoxicity and mutagenicity of cisplatin in human ovarian carcinoma cells." Mol Pharmacol. 2006 May;69(5):1748-54. PMID: 16495473 Lin X, Trang J, Okuda T, Howell SB. "DNA polymerase zeta accounts for the reduced cytotoxicity and enhanced mutagenicity of cisplatin in human colon carcinoma cells that have lost DNA mismatch repair." Clin Cancer Res. 2006 Jan 15;12(2):563-8. PMID: 16428501 Safaei R, Larson BJ, Cheng TC, Gibson MA, Otani S, Naerdemann W, Howell SB. "Abnormal lysosomal trafficking and enhanced exosomal export of cisplatin in drug-resistant human ovarian carcinoma cells." Mol Cancer Ther. 2005 Oct;4(10):1595-604. PMID: 16227410 Okuda T, Lin X, Trang J, Howell SB. "Suppression of hREV1 expression reduces the rate at which human ovarian carcinoma cells acquire resistance to cisplatin." Mol Pharmacol. 2005 Jun;67(6):1852-60. PMID: 15758147 Safaei R, Katano K, Larson BJ, Samimi G, Holzer AK, Naerdemann W, Tomioka M, Goodman M, Howell SB. "Intracellular localization and trafficking of fluorescein-labeled cisplatin in human ovarian carcinoma cells." Clin Cancer Res. 2005 Jan 15;11(2 Pt 1):756-67. PMID: 15701866 Samimi G, Manorek G, Castel R, Breaux JK, Cheng TC, Berry CC, Los G, Howell SB. "cDNA microarray-based identification of genes and pathways associated with oxaliplatin resistance." Cancer Chemother Pharmacol. 2005 Jan;55(1):1-11. PMID: 15378272 Safaei R, Howell SB. "Copper transporters regulate the cellular pharmacology and sensitivity to Pt drugs." Crit Rev Oncol Hematol. 2005 Jan;53(1):13-23. PMID: 15607932 Wu F, Lin X, Okuda T, Howell SB. "DNA polymerase zeta regulates cisplatin cytotoxicity, mutagenicity, and the rate of development of cisplatin resistance." Cancer Res. 2004 Nov 1;64(21):8029-35. PMID: 15520212 Holzer AK, Katano K, Klomp LW, Howell SB. "Cisplatin rapidly down-regulates its own influx transporter hCTR1 in cultured human ovarian carcinoma cells." Clin Cancer Res. 2004 Oct 1;10(19):6744-9. PMID: 15475465 Safaei R, Holzer AK, Katano K, Samimi G, Howell SB. "The role of copper transporters in the development of resistance to Pt drugs." J Inorg Biochem. 2004 Oct;98(10):1607-13. PMID: 15458823 Holzer AK, Samimi G, Katano K, Naerdemann W, Lin X, Safaei R, Howell SB. "The copper influx transporter human copper transport protein 1 regulates the uptake of cisplatin in human ovarian carcinoma cells." Mol Pharmacol. 2004 Oct;66(4):817-23. PMID: 15229296 Samimi G, Safaei R, Katano K, Holzer AK, Rochdi M, Tomioka M, Goodman M, Howell SB. "Increased expression of the copper efflux transporter ATP7A mediates resistance to cisplatin, carboplatin, and oxaliplatin in ovarian cancer cells." Clin Cancer Res. 2004 Jul 15;10(14):4661-9. PMID: 15269138 Katano K, Safaei R, Samimi G, Holzer A, Tomioka M, Goodman M, Howell SB. "Confocal microscopic analysis of the interaction between cisplatin and the copper transporter ATP7B in human ovarian carcinoma cells." Clin Cancer Res. 2004 Jul 1;10(13):4578-88. PMID: 15240550 Samimi G, Katano K, Holzer AK, Safaei R, Howell SB. "Modulation of the cellular pharmacology of cisplatin and its analogs by the copper exporters ATP7A and ATP7B." Mol Pharmacol. 2004 Jul;66(1):25-32. PMID: 15213293 Safaei R, Katano K, Samimi G, Naerdemann W, Stevenson JL, Rochdi M, Howell SB. "Cross-resistance to cisplatin in cells with acquired resistance to copper." Cancer Chemother Pharmacol. 2004 Mar;53(3):239-46. PMID: 14648017 Lin X, Zhang Q, Rice JR, Stewart DR, Nowotnik DP, Howell SB. "Improved targeting of platinum chemotherapeutics. the antitumour activity of the HPMA copolymer platinum agent AP5280 in murine tumour models." Eur J Cancer. 2004 Jan;40(2):291-7. PMID: 14728945 Samimi G, Varki NM, Wilczynski S, Safaei R, Alberts DS, Howell SB. "Increase in expression of the copper transporter ATP7A during platinum drug-based treatment is associated with poor survival in ovarian cancer patients." Clin Cancer Res. 2003 Dec 1;9(16 Pt 1):5853-9. PMID: 14676106 Katano K, Safaei R, Samimi G, Holzer A, Rochdi M, Howell SB. "The copper export pump ATP7B modulates the cellular pharmacology of carboplatin in ovarian carcinoma cells." Mol Pharmacol. 2003 Aug;64(2):466-73. PMID: 12869652
Gerardot BD, Strauf S, de Dood MJ, Bychkov AM, Badolato A, Hennessy K, Hu EL, Bouwmeester D, Petroff PM. "Photon statistics from coupled quantum dots." Phys Rev Lett. 2005 Sep 23;95(13):137403. PMID: 16197178 Badolato A, Hennessy K, Atature M, Dreiser J, Hu E, Petroff PM, Imamoglu A. "Deterministic coupling of single quantum dots to single nanocavity modes." Science. 2005 May 20;308(5725):1158-61. PMID: 15905398 Bartl MH, Boettcher SW, Hu EL, Stucky GD. "Dye-activated hybrid organic/inorganic mesostructured titania waveguides." J Am Chem Soc. 2004 Sep 8;126(35):10826-7. PMID: 15339151
Rassenti LZ, Kipps TJ. "Clinical utility of assessing ZAP-70 and CD38 in chronic lymphocytic leukemia." Cytometry B Clin Cytom. 2006 Aug 11;70B(4):209-213. PMID: 16906583 Castro JE, Prada CE, Aguillon RA, Kitada S, Fukuda T, Motta M, Wu C, Dicker F, Sun G, Wang JY, Carson DA, Reed JC, Kipps TJ. "Thymidine-phosphorothioate oligonucleotides induce activation and apoptosis of CLL cells independently of CpG motifs or BCL-2 gene interference." Leukemia. 2006 Apr;20(4):680-8. PMID: 16498393 Burger JA, Kipps TJ. "CXCR4: a key receptor in the crosstalk between tumor cells and their microenvironment." Blood. 2006 Mar 1;107(5):1761-7. PMID: 16269611 Binet JL, Caligaris-Cappio F, Catovsky D, Cheson B, Davis T, Dighiero G, Dohner H, Hallek M, Hillmen P, Keating M, Montserrat E, Kipps TJ, Rai K. "Perspectives on the use of new diagnostic tools in the treatment of chronic lymphocytic leukemia." Blood. 2006 Feb 1;107(3):859-61. PMID: 16223776 Messmer D, Kipps TJ. "CD154 gene therapy for human B-cell malignancies." Ann N Y Acad Sci. 2005 Dec;1062:51-60. PMID: 16461788 Castro JE, Prada CE, Loria O, Kamal A, Chen L, Burrows FJ, Kipps TJ. "ZAP-70 is a novel conditional heat shock protein 90 (Hsp90) client: inhibition of Hsp90 leads to ZAP-70 degradation, apoptosis, and impaired signaling in chronic lymphocytic leukemia." Blood. 2005 Oct 1;106(7):2506-12. PMID: 15972449 Kater AP, Dicker F, Mangiola M, Welsh K, Houghten R, Ostresh J, Nefzi A, Reed JC, Pinilla C, Kipps TJ. "Inhibitors of XIAP sensitize CD40-activated chronic lymphocytic leukemia cells to CD95-mediated apoptosis." Blood. 2005 Sep 1;106(5):1742-8. Epub 2005 May 24. PMID: 15914559 Nishio M, Endo T, Tsukada N, Ohata J, Kitada S, Reed JC, Zvaifler NJ, Kipps TJ. "Nurselike cells express BAFF and APRIL, which can promote survival of chronic lymphocytic leukemia cells via a paracrine pathway distinct from that of SDF-1alpha." Blood. 2005 Aug 1;106(3):1012-20. Epub 2005 Apr 28. PMID: 15860672 Dicker F, Kater AP, Fukuda T, Kipps TJ. "Fas-ligand (CD178) and TRAIL synergistically induce apoptosis of CD40-activated chronic lymphocytic leukemia B cells." Blood. 2005 Apr 15;105(8):3193-8. PMID: 15339846 Chen L, Apgar J, Huynh L, Dicker F, Giago-McGahan T, Rassenti L, Weiss A, Kipps TJ. "ZAP-70 directly enhances IgM signaling in chronic lymphocytic leukemia." Blood. 2005 Mar 1;105(5):2036-41. Epub 2004 Oct 28. PMID: 15514014 Ohata J, Zvaifler NJ, Nishio M, Boyle DL, Kalled SL, Carson DA, Kipps TJ. "Fibroblast-like synoviocytes of mesenchymal origin express functional B cell-activating factor of the TNF family in response to proinflammatory cytokines." J Immunol. 2005 Jan 15;174(2):864-70. PMID: 15634908 Widhopf GF 2nd, Rassenti LZ, Toy TL, Gribben JG, Wierda WG, Kipps TJ. "Chronic lymphocytic leukemia B cells of more than 1% of patients express virtually identical immunoglobulins." Blood. 2004 Oct 15;104(8):2499-504. PMID: 15217828 Rassenti LZ, Huynh L, Toy TL, Chen L, Keating MJ, Gribben JG, Neuberg DS, Flinn IW, Rai KR, Byrd JC, Kay NE, Greaves A, Weiss A, Kipps TJ. "ZAP-70 compared with immunoglobulin heavy-chain gene mutation status as a predictor of disease progression in chronic lymphocytic leukemia." N Engl J Med. 2004 Aug 26;351(9):893-901. PMID: 15329427 Lu D, Zhao Y, Tawatao R, Cottam HB, Sen M, Leoni LM, Kipps TJ, Corr M, Carson DA. "Activation of the Wnt signaling pathway in chronic lymphocytic leukemia." Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):3118-23. PMID: 14973184 Becattini B, Kitada S, Leone M, Monosov E, Chandler S, Zhai D, Kipps TJ, Reed JC, Pellecchia M. "Rational design and real time, in-cell detection of the proapoptotic activity of a novel compound targeting Bcl-X(L)." Chem Biol. 2004 Mar;11(3):389-95. PMID: 15123268] Widhopf GF 2nd, Brinson DC, Kipps TJ, Tighe H. "Transgenic expression of a human polyreactive Ig expressed in chronic lymphocytic leukemia generates memory-type B cells that respond to nonspecific immune activation." J Immunol. 2004 Feb 15;172(4):2092-9. PMID: 14764674 Rieger R, Kipps TJ. "CpG oligodeoxynucleotides enhance the capacity of adenovirus-mediated CD154 gene transfer to generate effective B-cell lymphoma vaccines." Cancer Res. 2003 Jul 15;63(14):4128-35. PMID: 12874017 Kipps TJ. "Immunobiology of chronic lymphocytic leukemia." Curr Opin Hematol. 2003 Jul;10(4):312-8. Wu CC, Castro JE, Motta M, Cottam HB, Kyburz D, Kipps TJ, Corr M, Carson DA. "Selection of oligonucleotide aptamers with enhanced uptake and activation of human leukemia B cells." Hum Gene Ther. 2003 Jun 10;14(9):849-60. PMID: 12828856 Payne PR, Greaves AW, Kipps TJ. "CRC Clinical Trials Management System (CTMS): an integrated information management solution for collaborative clinical research." AMIA Annu Symp Proc. 2003;:967. PMID: 14728471 Greaves AW, Payne PR, Rassenti L, Kipps TJ. "CRC Tissue Core Management System (TCMS): integration of basic science and clinical data for translational research." AMIA Annu Symp Proc. 2003;:853. PMID: 14728358 Chen L, Widhopf G, Huynh L, Rassenti L, Rai KR, Weiss A, Kipps TJ. "Expression of ZAP-70 is associated with increased B-cell receptor signaling in chronic lymphocytic leukemia." Blood. 2002 Dec 15;100(13):4609-14. PMID: 12393534 Pedersen IM, Kitada S, Schimmer A, Kim Y, Zapata JM, Charboneau L, Rassenti L, Andreeff M, Bennett F, Sporn MB, Liotta LD, Kipps TJ, Reed JC. "The triterpenoid CDDO induces apoptosis in refractory CLL B cells." Blood. 2002 Oct 15;100(8):2965-72. PMID: 12351409 Pedersen IM, Kitada S, Leoni LM, Zapata JM, Karras JG, Tsukada N, Kipps TJ, Choi YS, Bennett F, Reed JC. "Protection of CLL B cells by a follicular dendritic cell line is dependent on induction of Mcl-1." Blood. 2002 Sep 1;100(5):1795-801. PMID: 12176902
Miller KA, Yang RD, Hale MJ, Park J, Fruhberger B, Colesniuc CN, Schuller IK, Kummel AC, Trogler WC. "Electrode independent chemoresistive response for cobalt phthalocyanine in the space charge limited conductivity regime." J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 2006 Jan 12;110(1):361-6. PMID: 16471543 Hale MJ, Winn DL, Grassman TJ, Kummel AC, Droopad R. "Chemically resolved scanning tunneling microscopy imaging of Al on p-type Al0.1Ga0.9As(001)-c(2x8)(2x4)." J Chem Phys. 2005 Mar 22;122(12):124702. PMID: 15836404 Grassman TJ, Poon GC, Kummel AC. "Low coverage spontaneous etching and hyperthermal desorption of aluminum chlorides from Cl2/Al(111)." J Chem Phys. 2004 Nov 8;121(18):9018-30. PMID: 15527367 Sexton JZ, Kummel AC. "Island morphology statistics and growth mechanism for oxidation of the Al(111) surface with thermal O2 and NO." J Chem Phys. 2004 Oct 1;121(13):6518-24. PMID: 15446953 Hale MJ, Sexton JZ, Winn DL, Kummel AC, Erbudak M, Passlack M. "The influence of bond flexibility and molecular size on the chemically selective bonding of In2O and Ga2O on GaAs(001)-c(2 x 8)/(2 x 4)." J Chem Phys. 2004 Mar 22;120(12):5745-54. PMID: 15267453 Kummel AC. "Chemistry. How to assemble a molecular junction." Science. 2003 Oct 3;302(5642):69-70. PMID: 14526069 Komrowski AJ, Sexton JZ, Kummel AC, Binetti M, Weisse O, Hasselbrink E. "Oxygen abstraction from dioxygen on the Al(111) surface." Phys Rev Lett. 2001 Dec 10;87(24):246103. PMID: 11736518 McLean JG, Kruse P, Guo-Ping J, Ruda HE, Kummel AC. "Anomalous mobility of strongly bound surface species: Cl on GaAs(001)-c(8 x 2)." Phys Rev Lett. 2000 Aug 14;85(7):1488-91. PMID: 10970536 Pettus KA, Taylor PR, Kummel AC. "Chemical selectivity in the remote abstractive chemisorption of ICl on Al(111)." Faraday Discuss. 2000;(117):321-9; discussion 331-45. PMID: 11272002
Vera DR, Mattrey RF. "A molecular CT blood pool contrast agent." Acad Radiol. 2002 Jul;9(7):784-92. PMID: 12139092 Coley BD, Arellano RS, Talner LB, Baker KG, Peterson T, Mattrey RF. "Renal resistive index in experimental partial and complete ureteral obstruction." Acad Radiol. 1995 May;2(5):373-8. PMID: 9419578 Steinbach GC, Baker KG, Lim GL, Mattrey RF, Arellano RS. "The use of Imagent BP as a blood pool contrast agent to visualize and quantitate liver tumor burden." Artif Cells Blood Substit Immobil Biotechnol. 1994;22(4):1501-9. PMID: 7849963 Baker KG, Wrigley R, Saunders HB, Mattrey RF. "Efficacy of Imagent BP at 1.5ml/kg in a rabbit liver tumor model." Artif Cells Blood Substit Immobil Biotechnol. 1994;22(4):1491-9. PMID: 7849962 Wootton SL, Coley BD, Hilton SV, Edwards DK 3rd, Amberg JR, Mattrey RF. "Value of brominated fluorocarbons for the radiographic diagnosis of small-bowel obstruction: comparison with other contrast agents in rats." AJR Am J Roentgenol. 1993 Aug;161(2):409-16. PMID: 8333387 Easter DW, Shackford SR, Mattrey RF. "A prospective, randomized comparison of computed tomography with conventional diagnostic methods in the evaluation of penetrating injuries to the back and flank." Arch Surg. 1991 Sep;126(9):1115-9. PMID: 1929843 Mattrey RF, Brown JJ, Shelton RE, Ogino MT, Johnson KK, Mitten RM. "Use of perfluorooctylbromide (PFOB) to detect liver abscesses with computed tomography. Safety and efficacy." Invest Radiol. 1991 Sep;26(9):792-8. PMID: 1938289 Lin MC, Forrest JV, Mattrey RF, Lasser EC. "Intravascular hematocrit effect in cross-sectional CT imaging." J Comput Assist Tomogr. 1991 May-Jun;15(3):464-6. PMID: 2026811 Coley BD, Mattrey RF, Mitten RM, Peterson T. "AUR Memorial Award 1990. The physiologic basis of the radiodense renal medulla after the administration of blood pool contrast agent PFOB." Invest Radiol. 1990 Dec;25(12):1287-93. PMID: 2279907 Mattrey RF. "Potential role of perfluorooctylbromide in the detection and characterization of liver lesions with CT." Radiology. 1989 Jan;170(1 Pt 1):18-20. PMID: 2909094
Blair, S.L., Rose, D.M., Hochwald, S.N., Sachar, S, Burt, M., Oral L-2-OXO-4- Thiazoldine Carboxylate administration reduces bacterial translocation after Abdominal radiation. Surgical Forum 1995; 26:89-91. Blair, S.L., Rose, D.M., Sachar, S, Burt, M., Oral L-2-Oxo-4-Thiazolidine Carboxylate reduces bacterial translocation after radiation in the Fischer rat. JSR 1996; 65: 165-8. Blair, S.L., Heerdt, P., Sachar, S., Abolhoda, A., Hochwald, S., Cheng, H., Burt, M., Glutathione metabolism in patients with non-small cell lung cancers. Cancer Res 1997; 57: 152-5. Karpoff, H.M., D’Angelica, M., Blair, S., M.D., Federoff, H., Fong, Y. Prevention of hepatic metastasis in rats with herpes viral vaccines and gamma interferon. JCI 1997; 99:799-804. Blair, S.L., O’Shea, K.E., Orr, R.K., Surgeon variability in treating nonpalpable breast cancer: Surgical Oncology as a value added specialty. Ann Surg Onc 1998; 5: 29-31. Blair, S.L., Lewis, J.L., Leung, D.L., Woodruff, J., Brennan, M.F., Multifocal extremity sarcoma: An uncommon and controversial entity. Ann Surg Onc 1998; 5: 37-40. Blair S.L., Karpoff HM, Hodyl C, fong Y, Pretreatment with IFN-gamma decreases infectious complications after partial hepatectomy in the rat. J Interferon Cytokine Res 1998;18(3): 175-80. Blair S.L., Shah S., Tamin W., Quinaln R., Swanson R., Surgical resection improves survival in the treatment of early gastric lymphoma. J Gasrointest Surg 2000; 4:304-309. Blair S.L., Ellenhorn JD., Transanal excision for low rectal cancers is curative in early stage disease with favorable histology. Am Surg 2000;66:817-820. Blair S.L., Schwarz R., Chu, D.Z. Outcome of palliative operations for malignant bowel obstruction in patients with non-gynecological malignancy. Ann Surg Onc 2001;8:632-637 Blair SL, Schwarz RE. Advanced age does not contribute to increased risks or poor outcome after major abdominal operations. Am Surg 2001 Dec;67(12): 1123-7 Blair S.L., Schwarz R., Chu, D.Z. Outcome of palliative operations for malignant bowel obstruction in patients with non-gynecological malignancy. Ann Surg Onc 2001;8:632-637 Blair S.L., Grant M. , Chu, D.Z. Cullinane C., Dean G., Schwarz R., Wagman L., Quality of Life in Patients with Colorectal Metastasis and Intrahepatic Chemotherapy. Ann Surg Oncol. 2003 Mar-Apr;10(2):144-9 Fuller RA, Clark J, Kretzner L, Korns D, Blair SL, Crocitto LE, Smith SS. Use of microfluidics chips for the detection of human telomerase RNA. Anal Biochem 2003 Feb 15;313(2):331-4 Blair SL, Yang M, Dao A, Jiang P, Moossa AR, Hoffman RM. Lymphatic mapping and microscopic staging using green fluorescent protein in an orthotopic human colon cancer model. Proceedings of the American Association for Cancer Research 2003 July 44:3416 Can large B-cell ymphoma mimic cystic lesions of the spleen? Int J Gastrointest Cancer. 2005;35(1):83-8. Al-refaie, W.B., Ali, M., Chu, D.Z., MD, Paz, I.P., Blair, S.L., Clear Cell Sarcoma in The Era of Sentinel Lymph Node Mapping. Journal of Surgical Oncology 2004;87:126-129 Blair, SL, Al-Refaie, W B. Wang-Rodriguez, J., Ali, W., Behling, C., Moossa, AR., Gastrointestinal Stromal Tumors Express RAS Oncogene; A Potential Role for Diagnosis & Treatment. Arch Surg. 2005 Jun;140(6):543-7; discussion 547-8. Greenberg, JI., Takabe, K, Blair, SL., Peritoneal Loose Body Can Cause Partial Bowel Obstruction. Accepted for publication Journal of Gastrointestinal Surgery. Blair, SL., Mortimer, J.E., Management of Early Stage Breast Cancer Developing in the Elderly. Accepted for publication Aging Health. Blair SL, Schwarz RE, Surgical considerations in intensive care patients with malignancies. Critical Care Clinics of North America; 2001 Jul;17(3):721-42, ix.
Makela AR, Matilainen H, White DJ, Ruoslahti E, Oker-Blom C. "Enhanced baculovirus-mediated transduction of human cancer cells by tumor-homing peptides." J Virol. 2006 Jul;80(13):6603-11. PMID: 16775347 abstract Zhang L, Giraudo E, Hoffman JA, Hanahan D, Ruoslahti E. "Lymphatic zip codes in premalignant lesions and tumors." Cancer Res. 2006 Jun 1;66(11):5696-706. Erratum in: Cancer Res. 2006 Jul 1;66(13):6894. PMID: 16740707 abstract Harris TJ, von Maltzahn G, Derfus AM, Ruoslahti E, Bhatia SN. "Proteolytic actuation of nanoparticle self-assembly." Angew Chem Int Ed Engl. 2006 May 5;45(19):3161-5. PMID: 16642514 Pilch J, Franzin CM, Knowles LM, Ferrer FJ, Marassi FM, Ruoslahti E. "The anti-angiogenic peptide anginex disrupts the cell membrane." J Mol Biol. 2006 Mar 3;356(4):876-85. Epub 2005 Dec 20. PMID: 16403516 abstract Pilch J, Brown DM, Komatsu M, Jarvinen TA, Yang M, Peters D, Hoffman RM, Ruoslahti E. "Peptides selected for binding to clotted plasma accumulate in tumor stroma and wounds." Proc Natl Acad Sci U S A. 2006. Feb 21;103(8):2800-4. Epub 2006 Feb 13. PMID: 16476999 abstract Komatsu M, Ruoslahti E. "R-Ras is a global regulator of vascular regeneration that suppresses intimal hyperplasia and tumor angiogenesis." Nat Med. 2005 Dec;11(12):1346-50. Epub 2005 Nov 13. PMID: 16286923 abstract Zhang L, Hoffman JA, Ruoslahti E. "Molecular profiling of heart endothelial cells." Circulation. 2005 Sep 13;112(11):1601-11. Epub 2005 Sep 6. PMID: 16144998 abstract Lee BH, Ruoslahti E. "Alpha5beta1 integrin stimulates Bcl-2 expression and cell survival through Akt, focal adhesion kinase, and Ca2+/calmodulin-dependent protein kinase IV." J Cell Biochem. 2005 Aug 15;95(6):1214-23. PMID: 15962308 abstract Pai JT, Ruoslahti E. "Identification of endothelial genes up-regulated in vivo." Gene. 2005 Feb 28;347(1):21-33. PMID: 15715960 abstract Akerman ME, Pilch J, Peters D, Ruoslahti E. "Angiostatic peptides use plasma fibronectin to home to angiogenic vasculature." Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2040-5. Epub 2005 Feb 1. PMID: 15687502 abstract Ruoslahti E, Duza T, Zhang L. "Vascular homing peptides with cell-penetrating properties." Curr Pharm Des. 2005;11(28):3655-60. Review. PMID: 16305501 abstract Alitalo K, Mohla S, Ruoslahti E. "Lymphangiogenesis and cancer: meeting report." Cancer Res. 2004 Dec 15;64(24):9225-9. PMID: 15604296 Laakkonen P, Akerman ME, Biliran H, Yang M, Ferrer F, Karpanen T, Hoffman RM, Ruoslahti E. "Antitumor activity of a homing peptide that targets tumor lymphatics and tumor cells." Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9381-6. Epub 2004 Jun 14. PMID: 15197262 abstract Brown DM, Pellecchia M, Ruoslahti E. "Drug identification through in vivo screening of chemical libraries." Chembiochem. 2004 Jun 7;5(6):871-5. 2004 Nov 5;5(11):1477. PMID: 15174173 Ruoslahti E. "Vascular zip codes in angiogenesis and metastasis." Biochem Soc Trans. 2004 Jun;32(Pt3):397-402. Review. PMID: 15157146 abstract Brown DM, Ruoslahti E. "Metadherin, a cell surface protein in breast tumors that mediates lung metastasis." Cancer Cell. 2004 Apr;5(4):365-74. PMID: 15093543 abstract Jan Y, Matter M, Pai JT, Chen YL, Pilch J, Komatsu M, Ong E, Fukuda M, Ruoslahti E. "A mitochondrial protein, Bit1, mediates apoptosis regulated by integrins and Groucho/TLE corepressors." Cell. 2004 Mar 5;116(5):751-62. Erratum in: Cell. 2005 Aug 12;122(3):485-6. PMID: 15006356 abstract De Pereda JM, Waas WF, Jan Y, Ruoslahti E, Schimmel P, Pascual J. "Crystal structure of a human peptidyl-tRNA hydrolase reveals a new fold and suggests basis for a bifunctional activity." J Biol Chem. 2004 Feb 27;279(9):8111-5. Epub 2003 Dec 5. PMID: 14660562 abstract Guibinga GH, Hall FL, Gordon EM, Ruoslahti E, Friedmann T. "Ligand-modified vesicular stomatitis virus glycoprotein displays a temperature-sensitive intracellular trafficking and virus assembly phenotype." Mol Ther. 2004 Jan;9(1):76-84. PMID: 14741780 abstract Christian S, Pilch J, Akerman ME, Porkka K, Laakkonen P, Ruoslahti E. "Nucleolin expressed at the cell surface is a marker of endothelial cells in angiogenic blood vessels." J Cell Biol. 2003 Nov 24;163(4):871-8. PMID: 14638862 abstract Joyce JA, Laakkonen P, Bernasconi M, Bergers G, Ruoslahti E, Hanahan D. "Stage-specific vascular markers revealed by phage display in a mouse model of pancreatic islet tumorigenesis." Cancer Cell. 2003 Nov;4(5):393-403. PMID: 14667506 abstract Hoffman JA, Giraudo E, Singh M, Zhang L, Inoue M, Porkka K, Hanahan D, Ruoslahti E. "Progressive vascular changes in a transgenic mouse model of squamous cell carcinoma." Cancer Cell. 2003 Nov;4(5):383-91. PMID: 14667505 abstract Ruoslahti E. "The RGD story: a personal account." Matrix Biol. 2003 Nov;22(6):459-65. PMID: 14667838 Yi M, Sakai T, Fassler R, Ruoslahti E. "Antiangiogenic proteins require plasma fibronectin or vitronectin for in vivo activity." Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11435-8. Epub 2003 Sep 17. PMID: 13679585 abstract Briknarova K, Akerman ME, Hoyt DW, Ruoslahti E, Ely KR. "Anastellin, an FN3 fragment with fibronectin polymerization activity, resembles amyloid fibril precursors." J Mol Biol. 2003 Sep 5;332(1):205-15. PMID: 12946358 abstract Itano N, Okamoto S, Zhang D, Lipton SA, Ruoslahti E. "Cell spreading controls endoplasmic and nuclear calcium: a physical gene regulation pathway from the cell surface to the nucleus." Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5181-6. Epub 2003 Apr 17. PMID: 12702768 abstract Ruoslahti E. "Drug targeting to specific vascular sites." Drug Discov Today. 2002 Nov 15;7(22):1138-43. Review. PMID: 12546857 abstract Akerman ME, Chan WC, Laakkonen P, Bhatia SN, Ruoslahti E. "Nanocrystal targeting in vivo." Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12617-21. Epub 2002 Sep 16. PMID: 12235356 abstract Ruoslahti E. "Antiangiogenics meet nanotechnology." Cancer Cell. 2002 Aug;2(2):97-8. PMID: 12204528 abstract Laakkonen P, Porkka K, Hoffman JA, Ruoslahti E. "A tumor-homing peptide with a targeting specificity related to lymphatic vessels." Nat Med. 2002 Jul;8(7):751-5. Epub 2002 Jun 10. PMID: 12053175 abstract Porkka K, Laakkonen P, Hoffman JA, Bernasconi M, Ruoslahti E. "A fragment of the HMGN2 protein homes to the nuclei of tumor cells and tumor endothelial cells in vivo." Proc Natl Acad Sci U S A. 2002 May 28;99(11):7444-9. PMID: 12032302 abstract Essler M, Ruoslahti E. "Molecular specialization of breast vasculature: a breast-homing phage-displayed peptide binds to aminopeptidase P in breast vasculature." Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):2252-7. PMID: 11854520 abstract Arap W, Haedicke W, Bernasconi M, Kain R, Rajotte D, Krajewski S, Ellerby HM, Bredesen DE, Pasqualini R, Ruoslahti E. "Targeting the prostate for destruction through a vascular address." Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1527-31. PMID: 11830668 abstract Ruoslahti E. "Specialization of tumour vasculature." Nat Rev Cancer. 2002 Feb;2(2):83-90. Review. PMID: 12635171 abstract Zou JX, Liu Y, Pasquale EB, Ruoslahti E. "Activated SRC oncogene phosphorylates R-ras and suppresses integrin activity." J Biol Chem. 2002 Jan 18;277(3):1824-7. Epub 2001 Oct 26. PMID: 11682467 abstract Matter ML, Ruoslahti E. "A signaling pathway from the alpha5beta1 and alpha(v)beta3 integrins that elevates bcl-2 transcription." J Biol Chem. 2001 Jul 27;276(30):27757-63. Epub 2001 May 1. PMID: 11333270 abstract Assa-Munt N, Jia X, Laakkonen P, Ruoslahti E. "Solution structures and integrin binding activities of an RGD peptide with two isomers." Biochemistry. 2001 Feb 27;40(8):2373-8. PMID: 11327857 abstract Yi M, Ruoslahti E. "A fibronectin fragment inhibits tumor growth, angiogenesis, and metastasis." Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):620-4. PMID: 11209058 abstract Gerlag DM, Borges E, Tak PP, Ellerby HM, Bredesen DE, Pasqualini R, Ruoslahti E, Firestein GS. "Suppression of murine collagen-induced arthritis by targeted apoptosis of synovial neovasculature." Arthritis Res. 2001;3(6):357-61. Epub 2001 Sep 6. PMID: 11714389 abstract Borges E, Jan Y, Ruoslahti E. "Platelet-derived growth factor receptor beta and vascular endothelial growth factor receptor 2 bind to the beta 3 integrin through its extracellular domain." J Biol Chem. 2000 Dec 22;275(51):39867-73. PMID: 10964931 abstract Ruoslahti E. "Targeting tumor vasculature with homing peptides from phage display." Semin Cancer Biol. 2000 Dec;10(6):435-42. Review. PMID: 11170865 abstract Tellier MC, Greco G, Klotman M, Mosoian A, Cara A, Arap W, Ruoslahti E, Pasqualini R, Schnapp LM. "Superfibronectin, a multimeric form of fibronectin, increases HIV infection of primary CD4+ T lymphocytes." J Immunol. 2000 Mar 15;164(6):3236-45. PMID: 10706716 abstract Werr J, Johansson J, Eriksson EE, Hedqvist P, Ruoslahti E, Lindbom L. "Integrin alpha(2)beta(1) (VLA-2) is a principal receptor used by neutrophils for locomotion in extravascular tissue." Blood. 2000 Mar 1;95(5):1804-9. PMID: 10688841 abstract Wang B, Zou JX, Ek-Rylander B, Ruoslahti E. "R-Ras contains a proline-rich site that binds to SH2 domains and is required for integrin activation by R-Ras." J Biol Chem. 2000 Feb 18;275(7):5222-7. PMID: 10671570 abstract Pasqualini R, Koivunen E, Kain R, Lahdenranta J, Sakamoto M, Stryhn A, Ashmun RA, Shapiro LH, Arap W, Ruoslahti E. "Aminopeptidase N is a receptor for tumor-homing peptides and a target for inhibiting angiogenesis." Cancer Res. 2000 Feb 1;60(3):722-7. PMID: 10676659 abstract Fukuda MN, Ohyama C, Lowitz K, Matsuo O, Pasqualini R, Ruoslahti E, Fukuda M. "A peptide mimic of E-selectin ligand inhibits sialyl Lewis X-dependent lung colonization of tumor cells." Cancer Res. 2000 Jan 15;60(2):450-6. PMID: 10667600 abstract Zisch AH, Pazzagli C, Freeman AL, Schneller M, Hadman M, Smith JW, Ruoslahti E, Pasquale EB. "Replacing two conserved tyrosines of the EphB2 receptor with glutamic acid prevents binding of SH2 domains without abrogating kinase activity and biological responses." Oncogene. 2000 Jan 13;19(2):177-87. PMID: 10644995 abstract Ruoslahti E, Rajotte D. "An address system in the vasculature of normal tissues and tumors." Annu Rev Immunol. 2000;18:813-27. Review. PMID: 10837076 abstract Zou JX, Wang B, Kalo MS, Zisch AH, Pasquale EB, Ruoslahti E. "An Eph receptor regulates integrin activity through R-Ras." Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):13813-8. PMID: 10570155 abstract
Schwartz MP, Derfus AM, Alvarez SD, Bhatia SN, Sailor MJ. "The smart Petri dish: a nanostructured photonic crystal for real-time monitoring of living cells." Langmuir. 2006 Aug 1;22(16):7084-90. PMID: 16863264 abstract Park JH, Derfus AM, Segal E, Vecchio KS, Bhatia SN, Sailor MJ. "Local heating of discrete droplets using magnetic porous silicon-based photonic crystals." J Am Chem Soc. 2006 Jun 21;128(24):7938-46. PMID: 16771508 abstract Thomas JC, Pacholski C, Sailor MJ. "Delivery of nanogram payloads using magnetic porous silicon microcarriers." Lab Chip. 2006 Jun;6(6):782-7. Epub 2006 Mar 21. PMID: 16738731 abstract Pacholski C, Yu C, Miskelly GM, Godin D, Sailor MJ. "Reflective interferometric fourier transform spectroscopy: a self-compensating label-free immunosensor using double-layers of porous SiO2." J Am Chem Soc. 2006 Apr 5;128(13):4250-2. PMID: 16568999 Pacholski C, Sartor M, Sailor MJ, Cunin F, Miskelly GM. "Biosensing using porous silicon double-layer interferometers: reflective interferometric Fourier transform spectroscopy." J Am Chem Soc. 2005 Aug 24;127(33):11636-45. PMID: 16104739 abstract Lin H, Gao T, Fantini J, Sailor MJ. "A porous silicon-palladium composite film for optical interferometric sensing of hydrogen." Langmuir. 2004 Jun 8;20(12):5104-8. PMID: 15984274 abstract Sailor MJ, Link JR. "'Smart dust': nanostructured devices in a grain of sand." Chem Commun (Camb). 2005 Mar 21;(11):1375-83. Epub 2005 Feb 10. PMID: 15756310 abstract Anglin EJ, Schwartz MP, Ng VP, Perelman LA, Sailor MJ. "Engineering the chemistry and nanostructure of porous silicon Fabry-Perot films for loading and release of a steroid." Langmuir. 2004 Dec 7;20(25):11264-9. PMID: 15568884 abstract Dorvee JR, Derfus AM, Bhatia SN, Sailor MJ. "Manipulation of liquid droplets using amphiphilic, magnetic one-dimensional photonic crystal chaperones." Nat Mater. 2004 Dec;3(12):896-9. Epub 2004 Nov 7. PMID: 15531887 abstract Link JR, Sailor MJ. "Smart dust: self-assembling, self-orienting photonic crystals of porous Si." Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10607-10. Epub 2003 Aug 28. PMID: 12947036 abstract Yoon MS, Ahn KH, Cheung RW, Sohn H, Link JR, Cunin F, Sailor MJ. "Covalent crosslinking of 1-D photonic crystals of microporous Si by hydrosilylation and ring-opening metathesis polymerization." Chem Commun (Camb). 2003 Mar 21;(6):680-1. PMID: 12703770 abstract Li YY, Cunin F, Link JR, Gao T, Betts RE, Reiver SH, Chin V, Bhatia SN, Sailor MJ. "Polymer replicas of photonic porous silicon for sensing and drug delivery applications." Science. 2003 Mar 28;299(5615):2045-7. PMID: 12663921 abstract Sohn H, Sailor MJ, Magde D, Trogler WC. "Detection of nitroaromatic explosives based on photoluminescent polymers containing metalloles." J Am Chem Soc. 2003 Apr 2;125(13):3821-30. PMID: 12656615 abstract Cunin F, Schmedake TA, Link JR, Li YY, Koh J, Bhatia SN, Sailor MJ. "Biomolecular screening with encoded porous-silicon photonic crystals." Nat Mater. 2002 Sep;1(1):39-41. PMID: 12618846 abstract Colicos MA, Collins BE, Sailor MJ, Goda Y. "Remodeling of synaptic actin induced by photoconductive stimulation." Cell. 2001 Nov 30;107(5):605-16. PMID: 11733060 abstract Sohn H, Calhoun RM, Sailor MJ, Trogler WC. "Detection of TNT and Picric Acid on Surfaces and in Seawater by Using Photoluminescent Polysiloles." Angew Chem Int Ed Engl. 2001 Jun 1;40(11):2104-2105. PMID: 11433457 Content S, Trogler WC, Sailor MJ. "Detection of nitrobenzene, DNT, and TNT vapors by quenching of porous silicon photoluminescence." Chemistry.2000 Jun 16;6(12):2205-13. PMID: 10926227 abstract Lin VS, Motesharei K, Dancil KP, Sailor MJ, Ghadiri MR. "A porous silicon-based optical interferometric biosensor." Science. 1997 Oct 31;278(5339):840-3. PMID: 9346478
Kim Y, Subramaniam S. "Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships." Proteins. 2006 Mar 1;62(4):1115-24. PMID: 16385560 Kim Y, Koyuturk M, Topkara U, Grama A, Subramaniam S. "Inferring functional information from domain co-evolution." Bioinformatics. 2006 Jan 1;22(1):40-9. PMID: 16301205 Pradervand S, Maurya MR, Subramaniam S. "Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages." Genome Biol. 2006;7(2):R11. PMID: 16507166 Cotter D, Maer A, Guda C, Saunders B, Subramaniam S. "LMPD: LIPID MAPS proteome database." Nucleic Acids Res. 2006 Jan 1;34(Database issue):D507-10. PMID: 16381922 Ogawa S, Lozach J, Benner C, Pascual G, Tangirala RK, Westin S, Hoffmann A, Subramaniam S, David M, Rosenfeld MG, Glass CK. "Molecular determinants of crosstalk between nuclear receptors and toll-like receptors." Cell. 2005 Sep 9;122(5):707-21. PMID: 16143103 Fahy E, Subramaniam S, Brown HA, Glass CK, Merrill AH Jr, Murphy RC, Raetz CR, Russell DW, Seyama Y, Shaw W, Shimizu T, Spener F, van Meer G, VanNieuwenhze MS, White SH, Witztum JL, Dennis EA. "A comprehensive classification system for lipids." J Lipid Res. 2005 May;46(5):839-61. PMID: 15722563 Papin JA, Hunter T, Palsson BO, Subramaniam S. "Reconstruction of cellular signalling networks and analysis of their properties." Nat Rev Mol Cell Biol. 2005 Feb;6(2):99-111. PMID: 15654321 Hsiao A, Worrall DS, Olefsky JM, Subramaniam S. "Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes." Bioinformatics. 2004 Nov 22;20(17):3108-27. PMID: 15217816 Bornheimer SJ, Maurya MR, Farquhar MG, Subramaniam S. "Computational modeling reveals how interplay between components of a GTPase-cycle module regulates signal transduction." Proc Natl Acad Sci U S A. 2004 Nov 9;101(45):15899-904. PMID: 15520372 Guda C, Fahy E, Subramaniam S. "MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins." Bioinformatics. 2004 Jul 22;20(11):1785-94. PMID: 15037509 Chukkapalli G, Guda C, Subramaniam S. "SledgeHMMER: a web server for batch searching the Pfam database." Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W542-4. PMID: 15215445 Guda C, Guda P, Fahy E, Subramaniam S. "MITOPRED: a web server for the prediction of mitochondrial proteins." Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W372-4. PMID: 15215413
Miller KA, Yang RD, Hale MJ, Park J, Fruhberger B, Colesniuc CN, Schuller IK, Kummel AC, Trogler WC. "Electrode independent chemoresistive response for cobalt phthalocyanine in the space charge limited conductivity regime." J Phys Chem B Condens Matter Mater Surf Interfaces Biophys 2006 Jan 12;110(1):361-6. PMID: 16471543 Toal SJ, Jones KA, Magde D, Trogler WC. "Luminescent silole nanoparticles as chemoselective sensors for Cr(VI)." J Am Chem Soc. 2005 Aug 24;127(33):11661-5. PMID: 16104742 Zmolek PB, Sohn H, Gantzel PK, Trogler WC. "Photopolymerization of liquid carbon disulfide produces nanoscale polythiene films." J Am Chem Soc. 2001 Feb 14;123(6):1199-207. PMID: 11456674
Saucerman JJ, Zhang J, Martin JC, Peng LX, Stenbit AE, Tsien RY, McCulloch AD. "Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes." Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12923-8. PMID: 16905651 abstract Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ. "Novel Chromophores and Buried Charges Control Color in mFruits(,)." Biochemistry. 2006 Aug 15;45(32):9639-9647. PMID: 16893165 abstract Palmer AE, Giacomello M, Kortemme T, Hires SA, Lev-Ram V, Baker D, Tsien RY. "Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs." Chem Biol. 2006 May;13(5):521-30. PMID: 16720273 abstract Giepmans BN, Adams SR, Ellisman MH, Tsien RY. "The fluorescent toolbox for assessing protein location and function." Science. 2006 Apr 14;312(5771):217-24. Review. PMID: 16614209 abstract Babendure JR, Babendure JL, Ding JH, Tsien RY. "Control of mammalian translation by mRNA structure near caps." RNA. 2006 May;12(5):851-61. Epub 2006 Mar 15. PMID: 16540693 abstract Sun M, Oakes JL, Ananthanarayanan SK, Hawley KH, Tsien RY, Adams SR, Yengo CM. "Dynamics of the upper 50-kDa domain of myosin V examined with fluorescence resonance energy transfer." J Biol Chem. 2006 Mar ;281(9):5711-7. Epub 2005 Dec 23. PMID: 16377637 abstract Zacharias DA, Tsien RY. "Molecular biology and mutation of green fluorescent protein." Methods Biochem Anal. 2006;47:83-120. Review. PMID: 16335711 Shaner NC, Steinbach PA, Tsien RY. "A guide to choosing fluorescent proteins." Nat Methods. 2005 Dec;2(12):905-9. Review. PMID: 16299475 abstract Gao W, Xing B, Tsien RY, Rao J. "Novel fluorogenic substrates for imaging beta-lactamase gene expression." J Am Chem Soc. 2003 Sep 17;125(37):11146-7. PMID: 16220906 Zhang J, Hupfeld CJ, Taylor SS, Olefsky JM, Tsien RY. "Insulin disrupts beta-adrenergic signalling to protein kinase A in adipocytes." Nature. 2005 Sep 22;437(7058):569-73. PMID: 16177793 abstract Martin BR, Giepmans BN, Adams SR, Tsien RY. "Mammalian cell-based optimization of the biarsenical-binding tetracysteine motif for improved fluorescence and affinity." Nat Biotechnol. 2005 Oct;23(10):1308-14. Epub 2005 Sep 11. PMID: 16155565 abstract Tsien RY. "Breeding molecules to spy on cells." Harvey Lect. 2003-2004;99:77-93. Review. PMID: 15984552 Goldstein JC, Munoz-Pinedo C, Ricci JE, Adams SR, Kelekar A, Schuler M, Tsien RY, Green DR. "Cytochrome c is released in a single step during apoptosis." Cell Death Differ. 2005 May;12(5):453-62. PMID: 15933725 abstract Wang Y, Botvinick EL, Zhao Y, Berns MW, Usami S, Tsien RY, Chien S. "Visualizing the mechanical activation of Src." Nature. 2005 Apr 21;434(7036):1040-5. PMID: 15846350 abstract Tsien RY. "Building and breeding molecules to spy on cells and tumors." FEBS Lett. 2005 Feb 7;579(4):927-32. Review. PMID: 15680976 abstract Jiang T, Olson ES, Nguyen QT, Roy M, Jennings PA, Tsien RY. "Tumor imaging by means of proteolytic activation of cell-penetrating peptides." Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17867-72. Epub 2004 Dec 15. PMID: 15601762 abstract Palmer AE, Jin C, Reed JC, Tsien RY. "Bcl-2-mediated alterations in endoplasmic reticulum Ca2+ analyzed with an improved genetically encoded fluorescent sensor." Proc Natl Acad Sci U S A. 2004 Dec 14;101(50):17404-9. Epub 2004 Dec 7. PMID: 15585581 abstract Kunkel MT, Ni Q, Tsien RY, Zhang J, Newton AC. "Spatio-temporal dynamics of protein kinase B/Akt signaling revealed by a genetically encoded fluorescent reporter." J Biol Chem. 2005 Feb 18;280(7):5581-7. Epub 2004 Dec 6. PMID: 15583002 abstract Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, Tsien RY. "Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein." Nat Biotechnol. 2004 Dec;22(12):1567-72. Epub 2004 Nov 21. PMID: 15558047 abstract Wang L, Jackson WC, Steinbach PA, Tsien RY. "Evolution of new nonantibody proteins via iterative somatic hypermutation." Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16745-9. Epub 2004 Nov 19. PMID: 15556995 abstract Chae HJ, Kim HR, Xu C, Bailly-Maitre B, Krajewska M, Krajewski S, Banares S, Cui J, Digicaylioglu M, Ke N, Kitada S, Monosov E, Thomas M, Kress CL, Babendure JR, Tsien RY, Lipton SA, Reed JC. "BI-1 regulates an apoptosis pathway linked to endoplasmic reticulum stress." Mol Cell. 2004 Aug 13;15(3):355-66. PMID: 15304216 abstract Dooley CT, Dore TM, Hanson GT, Jackson WC, Remington SJ, Tsien RY. "Imaging dynamic redox changes in mammalian cells with green fluorescent protein indicators." J Biol Chem. 2004 May 21;279(21):22284-93. Epub 2004 Feb 25. PMID: 14985369 abstract Sosinsky GE, Gaietta GM, Hand G, Deerinck TJ, Han A, Mackey M, Adams SR, Bouwer J, Tsien RY, Ellisman MH. "Tetracysteine genetic tags complexed with biarsenical ligands as a tool for investigating gap junction structure and dynamics." Cell Commun Adhes. 2003 Jul-Dec;10(4-6):181-6. PMID: 14681013 abstract Lev-Ram V, Mehta SB, Kleinfeld D, Tsien RY. "Reversing cerebellar long-term depression." Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15989-93. Epub 2003 Dec 11. PMID: 14671315 abstract Babendure JR, Adams SR, Tsien RY. "Aptamers switch on fluorescence of triphenylmethane dyes." J Am Chem Soc. 2003 Dec 3;125(48):14716-7. PMID: 14640641 Tour O, Meijer RM, Zacharias DA, Adams SR, Tsien RY. "Genetically targeted chromophore-assisted light inactivation." Nat Biotechnol. 2003 Dec;21(12):1505-8. Epub 2003 Nov 16. PMID: 14625562 abstract Tsien RY. "Imagining imaging's future." Nat Rev Mol Cell Biol. 2003 Sep;Suppl:SS16-21. Review. PMID: 14587522 abstract Tsai PS, Friedman B, Ifarraguerri AI, Thompson BD, Lev-Ram V, Schaffer CB, Xiong Q, Tsien RY, Squier JA, Kleinfeld D. "All-optical histology using ultrashort laser pulses." Neuron. 2003 Jul 3;39(1):27-41. PMID: 12848930 abstract Violin JD, Zhang J, Tsien RY, Newton AC. "A genetically encoded fluorescent reporter reveals oscillatory phosphorylation by protein kinase C." J Cell Biol. 2003 Jun 9;161(5):899-909. Epub 2003 Jun 2. PMID: 12782683 abstract Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, Zacharias DA, Tsien RY. "A monomeric red fluorescent protein." Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7877-82. PMID: 12060735 abstract Lev-Ram V, Wong ST, Storm DR, Tsien RY. "A new form of cerebellar long-term potentiation is postsynaptic and depends on nitric oxide but not cAMP." Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8389-93. Epub 2002 Jun 4. PMID: 12048250 abstract Adams SR, Campbell RE, Gross LA, Martin BR, Walkup GK, Yao Y, Llopis J, Tsien RY. "New biarsenical ligands and tetracysteine motifs for protein labeling in vitro and in vivo: synthesis and biological applications." J Am Chem Soc. 2002 May 29;124(21):6063-76. PMID: 12022841 abstract Zacharias DA, Violin JD, Newton AC, Tsien RY. "Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells." Science. 2002 May 3;296(5569):913-6. PMID: 11988576 abstract Gaietta G, Deerinck TJ, Adams SR, Bouwer J, Tour O, Laird DW, Sosinsky GE, Tsien RY, Ellisman MH. "Multicolor and electron microscopic imaging of connexin trafficking." Science. 2002 Apr 19;296(5567):503-7. PMID: 11964472 abstract Ting AY, Kain KH, Klemke RL, Tsien RY. "Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells." Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):15003-8. PMID: 11752449 abstract Zhang J, Ma Y, Taylor SS, Tsien RY. "Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering." Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):14997-5002. PMID: 11752448 abstract Griesbeck O, Baird GS, Campbell RE, Zacharias DA, Tsien RY. "Reducing the environmental sensitivity of yellow fluorescent protein. Mechanism and applications." J Biol Chem. 2001 Aug 3;276(31):29188-94. PMID: 11387331 abstract Gross LA, Baird GS, Hoffman RC, Baldridge KK, Tsien RY. "The structure of the chromophore within DsRed, a red fluorescent protein from coral." Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):11990-5. PMID: 11050230 abstract Baird GS, Zacharias DA, Tsien RY. "Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral." Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):11984-9. PMID: 11050229 abstract
Back To Top Peter Asbeck
Finkelstein H, Asbeck PM, Esener S. "Architecture and analysis of a self-assembled 3D array of carbon nanotubes and molecular memories." 2003 IEEE Conference on Nanotechnology. IEEE-NANO 2003 Proceedings, pp.441-4 vol.2. abstract Wittig JH Jr, Ryan AF, Asbeck PM. "A reusable microfluidic plate with alternate-choice architecture for assessing growth preference in tissue culture" Journal of Neuroscience Methods, vol.144, no.1, 15 May 2005, pp. 79-89. D. Qiao, Y. Zhao, T. Hung, Kimball D, M. Li, Asbeck P, Choi D, Kelly D, "Antenna impedance mismatch measurement and correction for adaptive CDMA transceivers." 2005 IEEE MTT-S International Microwave Symposium 2005, pp. 4. abstract Rode J, Hinrichs J, Asbeck P. "Transmitter architecture using digital generation of RF signals." Proceedings 2003 Radio Wireless. RAWCON Conference, IEEE, pp. 245-8. abstract Yonghoon Kim, Farcich NJ, Seong-Cheol Kim, Sangwook Nam, Asbeck PM, "Size reduction of microstrip antenna by elevating centre of patch." Electronics Letters, vol.38, no.20, 26 Sept. 2002, pp. 1163-5. abstract P. M. Asbeck, L. E. Larson, I. Galton, "Synergistic design of DSP and power amplifiers for wireless communications." IEEE Transactions on Microwave Theory and Techniques, vol.49, no.11, pp. 2163-2169, November 2001. abstract T. Hung, Metzger AG, Zampardi PJ, Iwamoto M, Asbeck PM. "Design of high-efficiency current-mode class-D amplifiers for wireless handsets." IEEE Transactions on Microwave Theory & Techniques, vol.53, no.1, Jan. 2005, pp.144-51 abstract D. Qiao, Molfino R, Lardizabal SM, Pillans B, Asbeck PM, Jerinic G. "An intelligently controlled RF power amplifier with a reconfigurable MEMS-varactor tuner." IEEE Transactions on Microwave Theory & Techniques, vol.53, no.3, pt.2, March 2005, pp.1089-95. abstract P. Draxler, I. Langmore and P.M.Asbeck. "Cortical Algorithm Applied to RF Power Amplifier Memory Modeling." Tech. Dig. 2004 IEEE Wireless and Microwave Technology Conference abstract Asbeck P, Galton I, Keh-Chung Wang, Jensen JF, Oki AK, Chang CTM. "Digital signal processing - up to microwave frequencies." IEEE Transactions on Microwave Theory and Techniques, vol.50, no.3, March 2002, pp. 900-9. abstract Larson L, Asbeck P, Wei Xiong. "Energy constrained RF transceivers for mobile wireless communications." WCNC. 1999 IEEE Wireless Communications and Networking Conference, IEEE, 1999, pp. 197-200 vol.1. abstract
Back To Top Sangeeta Bhatia
Underhill GH, Chen AA, Albrecht DR, Bhatia SN. "Assessment of hepatocellular function within PEG hydrogels." Biomaterials. 2006 Sep 15; PMID: 16979755 abstract Khetani SR, Bhatia SN. "Engineering tissues for in vitro applications." Curr Opin Biotechnol. 2006 Sep 13; PMID: 16978857 abstract Schwartz MP, Derfus AM, Alvarez SD, Bhatia SN, Sailor MJ. "The smart Petri dish: a nanostructured photonic crystal for real-time monitoring of living cells." Langmuir. 2006 Aug 1;22(16):7084-90. PMID: 16863264 abstract Park JH, Derfus AM, Segal E, Vecchio KS, Bhatia SN, Sailor MJ. "Local heating of discrete droplets using magnetic porous silicon-based photonic crystals." J Am Chem Soc. 2006 Jun 21;128(24):7938-46. PMID: 16771508 abstract Harris TJ, von Maltzahn G, Derfus AM, Ruoslahti E, Bhatia SN. "Proteolytic actuation of nanoparticle self-assembly." Angew Chem Int Ed Engl. 2006 May 5;45(19):3161-5. PMID: 16642514 Albrecht DR, Underhill GH, Wassermann TB, Sah RL, Bhatia SN. "Probing the role of multicellular organization in three-dimensional microenvironments." Nat Methods. 2006 May;3(5):369-75. PMID: 16628207 abstract Chen AA, Derfus AM, Khetani SR, Bhatia SN. "Quantum dots to monitor RNAi delivery and improve gene silencing." Nucleic Acids Res. 2005 Dec 13;33(22):e190. PMID: 16352864 abstract Flaim CJ, Chien S, Bhatia SN. "An extracellular matrix microarray for probing cellular differentiation." Nat Methods. 2005 Feb;2(2):119-25. Epub 2005 Jan 21. PMID: 15782209 abstract Albrecht DR, Tsang VL, Sah RL, Bhatia SN. "Photo- and electropatterning of hydrogel-encapsulated living cell arrays." Lab Chip. 2005 Jan;5(1):111-8. Epub 2004 Nov 24. PMID: 15616749 abstract Allen JW, Khetani SR, Bhatia SN. "In vitro zonation and toxicity in a hepatocyte bioreactor." Toxicol Sci. 2005 Mar;84(1):110-9. Epub 2004 Dec 8. PMID: 15590888 abstract Allen JW, Johnson RS, Bhatia SN. "Hypoxic inhibition of 3-methylcholanthrene-induced CYP1A1 expression is independent of HIF-1alpha." Toxicol Lett. 2005 Jan 15;155(1):151-9. PMID: 15585370 abstract Dorvee JR, Derfus AM, Bhatia SN, Sailor MJ. "Manipulation of liquid droplets using amphiphilic, magnetic one-dimensional photonic crystal chaperones." Nat Mater. 2004 Dec;3(12):896-9. Epub 2004 Nov 7. PMID: 15531887 abstract Chin VI, Taupin P, Sanga S, Scheel J, Gage FH, Bhatia SN. "Microfabricated platform for studying stem cell fates." Biotechnol Bioeng. 2004 Nov 5;88(3):399-415. PMID: 15486946 Albrecht DR, Sah RL, Bhatia SN. "Geometric and material determinants of patterning efficiency by dielectrophoresis." Biophys J. 2004 Oct;87(4):2131-47. PMID: 15454417 Lin P, Chan WC, Badylak SF, Bhatia SN. "Assessing porcine liver-derived biomatrix for hepatic tissue engineering." Tissue Eng. 2004 Jul-Aug;10(7-8):1046-53. PMID: 15363162 abstract Tsang VL, Bhatia SN. "Three-dimensional tissue fabrication." Adv Drug Deliv Rev. 2004 Sep 22;56(11):1635-47. PMID: 15350293 abstract Khetani SR, Szulgit G, Del Rio JA, Barlow C, Bhatia SN. "Exploring interactions between rat hepatocytes and nonparenchymal cells using gene expression profiling." Hepatology. 2004 Sep;40(3):545-54. PMID: 15349892 Li YY, Cunin F, Link JR, Gao T, Betts RE, Reiver SH, Chin V, Bhatia SN, Sailor MJ. "Polymer replicas of photonic porous silicon for sensing and drug delivery applications." Science. 2003 Mar 28;299(5615):2045-7. PMID: 12663921 abstract Cunin F, Schmedake TA, Link JR, Li YY, Koh J, Bhatia SN, Sailor MJ. "Biomolecular screening with encoded porous-silicon photonic crystals." Nat Mater. 2002 Sep;1(1):39-41. PMID: 12618846 abstract Allen JW, Bhatia SN. "Formation of steady-state oxygen gradients in vitro: application to liver zonation." Biotechnol Bioeng. 2003 May 5;82(3):253-62. PMID: 12599251 Gopalan SM, Flaim C, Bhatia SN, Hoshijima M, Knoell R, Chien KR, Omens JH, McCulloch AD. "Anisotropic stretch-induced hypertrophy in neonatal ventricular myocytes micropatterned on deformable elastomers." Biotechnol Bioeng. 2003 Mar 5;81(5):578-87. PMID: 12514807 Allen JW, Bhatia SN. "Improving the next generation of bioartificial liver devices." Semin Cell Dev Biol.2002 Dec;13(6):447-54. PMID: 12468246 abstract Allen JW, Bhatia SN. "Engineering liver therapies for the future." Tissue Eng. 2002 Oct;8(5):725-37. PMID: 12459052 abstract Akerman ME, Chan WC, Laakkonen P, Bhatia SN, Ruoslahti E. "Nanocrystal targeting in vivo." Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12617-21. Epub 2002 Sep 16. PMID: 12235356 abstract Liu VA, Jastromb WE, Bhatia SN. "Engineering protein and cell adhesivity using PEO-terminated triblock polymers." J Biomed Mater Res. 2002 Apr;60(1):126-34. PMID: 11835168 Allen JW, Hassanein T, Bhatia SN. "Advances in bioartificial liver devices." Hepatology. 2001 Sep;34(3):447-55. PMID: 11526528 Balis UJ, Behnia K, Dwarakanath B, Bhatia SN, Sullivan SJ, Yarmush ML, Toner M. "Oxygen consumption characteristics of porcine hepatocytes." Metab Eng. 1999 Jan;1(1):49-62. PMID: 10935754 abstract Bhatia SN, Balis UJ, Yarmush ML, Toner M. "Effect of cell-cell interactions in preservation of cellular phenotype: cocultivation of hepatocytes and nonparenchymal cells." FASEB J. 1999 Nov;13(14):1883-900. PMID: 10544172 abstract Bhatia SN, Suri V, Bundy A, Krauss CM. "Prenatal detection and mapping of a distal 8p deletion associated with congenital heart disease." Prenat Diagn.1999 Sep;19(9):863-7. PMID: 10521847 abstract Ledezma GA, Folch A, Bhatia SN, Balis UJ, Yarmush ML, Toner M. "Numerical model of fluid flow and oxygen transport in a radial-flow microchannel containing hepatocytes." J Biomech Eng. 1999 Feb;121(1):58-64. PMID: 10080090 abstract